Consensus Rules for Amino-Acid Characterisation using a Kernel method
Principle of use
CRAACK submits a formated imput file to the five following typing softwares:
* SVMTyp was built from SVMtorch (Ronan Collobert et al (2001) Journal of Machine Learning Research)
CRAACK is based on two consensus algorithm which tries to acccurate the responses of existant typing modules.
The first algorithm accomplishes the analysis with SVM technologie ( MySVM, Joachims, Thorsten (1999) Support Vector Learning, chapter 11. MIT Press).
The second one use a classical algorithm of vote.
Additionaly, secondary structural prediction is available (CSI :Wishart & Sykes. (1994) . J Biomol NMR)
Fig: Craack general flowchart:
CRAACK proposes a page containing the results of the softwares and a consensus result tab :
Num Modules Results
Authors & Reference
Benod C., Delsuc MA., Pons JL (2006) J. Chem. Inf. Model. 46 (3) 1517-1522